Archer Analysis

Version 6.2.0

Copyright 2014–2019, ArcherDX, Inc.

Released 19AUG2019

Limitations of Use

This product was developed, manufactured, and sold for in vitro use only. The product is not suitable for administration to humans or animals. MSDS sheets relevant to this product are available upon request.
End User License Agreement

Third Party Applications

Copies of these licenses are included with the source code for these packages included in this distribution. All applications are provided to you WITHOUT WARRANTY OF ANY KIND.

Application License Source Version
ABRA MIT License https://github.com/mozack/abra 0.97
Bamaddrg MIT License https://github.com/ekg/bamaddrg
Bcftools MIT / GNU General Public License https://github.com/samtools/bcftools 1.5
Bedtools GNU General Public License https://github.com/arq5x/bedtools2 2.26
Blast GNU Lesser General Public License https://blast.ncbi.nlm.nih.gov/blast/Blast.cgi 2.2.29
Bowtie2 GNU General Public License v3 http://bowtie-bio.sourceforge.net/bowtie2/index.shtml 2.2.9
BWA GNU General Public License v3 http://bio-bwa.sourceforge.net/ 0.7.12-r1039
Complete-Striped-Smith-Waterman-Library MIT License https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library 1.1
COSMIC https://cancer.sanger.ac.uk/cosmic 71
FastQC GNU General Public License http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ 0.11.5
Freebayes MIT License https://github.com/ekg/freebayes 0.9.9
HTSeq GNU General Public License http://www-huber.embl.de/HTSeq/doc/overview.html
Lofreq MIT License http://csb5.github.io/lofreq/ 2.1.1
Mixcr Proprietary license * https://milaboratory.com/software/mixcr/ 2
Muscle Public Domain http://www.drive5.com/muscle/ 3.8.31
Samtools MIT License https://github.com/samtools/samtools 1.5
VEP Apache License http://uswest.ensembl.org/info/docs/tools/vep/script/vep_download.html 94
Vcftools GNU Lesser General Public License v3 https://vcftools.github.io/ 0.1.11
Velvet GNU General Public License v2 http://www.ebi.ac.uk/~zerbino/velvet/ 1.2.10
JBrowse GNU Lesser General Public License v2.1 http://jbrowse.org/ 1.11.6
JQuery DataTables MIT License https://datatables.net/ 1.10.11
Django Solo Creative Commons Attribution 3.0 Unported https://github.com/lazybird/django-solo
django-formtools BSD 3-Clause License https://django-formtools.readthedocs.io/en/latest/ 2.1
django-otp BSD 2-Clause License https://django-otp-official.readthedocs.io/en/latest/ 0.4.3
drf-yasg BSD 3-Clause License https://drf-yasg.readthedocs.io/en/stable/ 1.10.2
Plotly.js MIT License https://plot.ly/javascript/ 1.23.1
* Proprietary License is non-transferable, and non-exclusive. Must only be used for sequencing data from ArcherDX based assays and can not be distributed elsewhere without written consent.

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ArcherDX, Inc.
2477 Flatiron Parkway, Suite 202
Boulder, CO 80301
Phone: 303-357-9001 or 877-771-1093
Email: tech@archerdx.com